BIMS

Tag: cell culture

New Perspectives on Students – FINALE!

by gwilson on Jun.01, 2009, under Students

cc-ep-school-quicksand-0361Okay, the end, I promise!

So, how can a college science department change its curriculum and pedagogy to reach today’s students in a world where the challenges and issues make this more difficult than ever?  We believe the BIMS program at McMurry provides the template by which an effective program can be built.  I’ve outlined the key elements below.

1. Less is more.   Our overarching approach to our degree has two key ingredients.  First, we believe it is important to know key foundational principles very well, and the rest of what is important will be added along the way.  We  believe emphasizing just-in-time teaching instead of just-in-case teaching.

2. Build the program one brick at a time.  Teach well individual pieces of the curriculum within courses, teach well how the pieces fit together to build the product.  Unique and independent, while also interrelated and inseparable.  Courses do not represent the end of learning on any topic, but instead are new tools to be used for overall learning.  Bricks together are not a house; bricks deliberately placed in mortar based on an overall plan is how you do construction.

3. Engage the unknown.  The unknowable – that which is not found in a textbook – has to be the driving force for engaging student learning.  Why not use knowledge and skills students are acquiring to accomplish something?  We would not know how to teach this major without research-rich teaching.

4. Provide proof of your success.  Our intent is to build a three-pronged portfolio to demonstrate the quality of our graduates.  Each BIMS major will graduate with a digital portfolio, a biological portfolio, and competency testing results.

So, how do these four elements blend together in the BIMS program?  Here’s an overview:

The new BIMS major represents a move by McMurry to provide a new type of Biology graduate whose laboratory skills and experience in molecular biology prepare them for further education or entry into employment in fields requiring such preparation: biotechnology, forensic science, biomedical research, and others.  At the same time, the focus and depth of the degree provide exceptional training in preparation for many graduate and professional programs. The curriculum is centered in contemporary biology and human health. This applied biology training and education is a big step forward in preparing biology graduates with the knowledge and skills expected for biologists in 2023.

 1. As novel as the collection of courses, the true innovation in the BIMS curriculum lies in the teaching philosophy and strategies that will be used. BIMS pedagogy incorporates a new approach to teaching fundamental principles of Biology – “content in context”. Central to the pedagogy is “research-rich” teaching, which gives students investigative assignments in all courses and requires application of skills learned for the purpose of answering interesting research problems. Thus, BIMS courses teach content along with skills in the context of investigation, and reinforce the knowledge and skills through open-ended projects. Students learn to think like scientists and act like scientists by working like scientists.

 

2. Every required BIMS lecture course includes critical reasoning and analysis. Every required BIMS lab includes experimental design and an open-ended research project. In some instances these may employ model systems widely used by top science programs (yeast, Chlamydomonas, bacteria impacting human health, primary and transformed cell lines). There will be plenty of experience in identifying a problem, asking interesting questions, and applying knowledge and skills to find a solution. Required courses will have literature analysis, scientific writing components, and speaking expectations.

 

3. All required BIMS labs take the “content in context” approach. Techniques and content tie together logically, as is currently done in BIOL 3410 Microbiology lab: bacterial strains isolated and identified by students early in the semester become the experimental organisms used for teaching subsequent topics and skills. We see no advantage in using “canned exercises” in our labs to teach stand-alone techniques and concepts unrelated to one another when our more “real-world”, integrated approach can be used instead.

 4. The “content in context” approach will span pairs or series of courses, allowing projects begun in one course to be expanded upon in others. Mutants created in BIOL 3460 Genetics lab can be studied in Molecular & Cell Biology (MCB) Lab. Cell products separated in the MCB lab can be analyzed or modified later in the Advanced Bioscience Lab or the capstone course, for example. Such products and evidentiary artifacts become a “biological portfolio” demonstrating skills proficiency and providing starting materials for the next course taken. In this way, we demonstrate that courses connect with one another, techniques from many courses and disciplines may be needed to solve a research problem, and discoveries are often multi-stage processes taking place over time. This is how science is accomplished, and our students will experience science as it is done.  

 5. It will be important to introduce students to sophisticated equipment and techniques they will encounter when they graduate. Experience and skills that may be transferred to new environments as “newer and better” approaches are developed will be fostered. Emphasis will be placed on hands-on use of such instrumentation to insure all students can “think” and “do”.

 

6. Knowledge and skills proficiency will be a hallmark of this program, with students being required to pass biology content “qualifying” exams in BIMS 4000 before placement in their senior capstone project. These topical exams will be administered in their junior year with opportunities for re-takes until proficiency in subject areas across the spectrum of biological studies is demonstrated. Additionally, we will reinforce knowledge obtained by administering comprehensive finals in all required BIMS courses as a matter of policy.

 

7. We believe a hallmark of any quality program is use of evidence-driven decisions for program improvement. Evidence for assessment can be provided in a number of ways.

 a. Biological Portfolio. The labs central to the BIMS major are focused on generating biological products/artifacts typical of the research lab, whether microbial strains, mutants, proteins, nucleic acids, gels, sequences, or data. These various products can be graded based on their quality, purity, quantity, and/or accuracy, and thus provide a basis for judging successful acquisition of skills and knowledge. The use of the biological portfolio in multiple courses provides confirmation of proficiency of students in skills development, as the quality of products from one course impacts their usefulness in subsequent labs.

 b. Lab Data and Communication Portfolio. Students find themselves responsible for various reports, posters, presentations, and other forms of reporting for their classes, as such artifacts are expected for all courses required for the BIMS major. Besides grades for effectiveness of the communication techniques, these sources can also be used to probe their depth of knowledge and understanding at each course level and thus provide insight into their development. By identifying benchmarks for expectations at sophomore, junior, and senior classifications, the progress toward achieving serviceable skills can be assessed.

 

c. Fundamental Knowledge Assessment. Each student will take BIMS 4000 BIMS Junior Exam during their junior year, with subject tests over foundational biological principles. This functions as the equivalent of diagnostic qualifying exams for graduate students, revealing strengths and weaknesses that must be remedied for students to successfully complete their degree. Students may re-take these exams until they achieve passing scores. Results from these exams will be used to revise and strengthen the curricula of lower level courses (for instance, particularly problematic areas where the pass rates on first or second attempts are below average would emerge and provide ample evidence of the need for taking corrective measures). This exam might also serve as the baseline exam for BIMS students, given in the first year or again in their senior capstone course, along with the MFT in Biology. Such information would be important to assessing “value added”. To help prepare students for these subject tests, BIMS courses will adopt a policy requiring comprehensive exams for all required lecture courses.

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Final Frenzy

by gwilson on Apr.15, 2009, under A Day in the Life...

dilutions3We are nearing the end of the spring semester at McMurry, and every course is experiencing the “crunch” that comes from too much left to do and to little time left for its accomplishment.  The BIMS program being in its infancy, we have had to settle for minor successes in most every class.  Sorting through the problems and issues associated with implementing a new approach to teaching has left us a bit disappointed while also very encouraged.

The Chlamydomonas races our freshman students were working on will have to be modified somewhat.  Isolation of the organisms from natural sources, culturing them, their purification, and selection of the fastest strains was not as straightforward as we’d hoped.  Too much light here, too few nutrients there, and we end up refocusing the course on how best to grow the “wee beasties”.  The final projects in Microbiology have been compacted into only two weeks due to overruns in previous experiments done by the class (the growth curve experiment previously reported, among them).  No doubt there will be some excellent projects still (one survey of produce items for Salmonella shows some promising early results, and another focused on how tobacco products influence bacterial growth and mutation looks to be very well designed).  The cancer research being done in the senior capstone course has been toned down a bit due to problems with culturing the cancer cells (as chronicled previously).  As a result, the DNA sequencing that was planned may now be modified into a less ambitious project.

Are we disappointed?  Yes.  Are we discouraged?  No.  Like research itself, the establishment of a new program or protocol is frequently a learning experience where adaptations and modifications are the norm.  In spite of the setbacks, much is being learned.  Faculty are learning our strengths and limitations and are sure this time next year the results we report will be exciting and interesting.  Students have experienced the “high” that comes from putting ideas to the test to find truth about nature.  More than one has expressed greater excitement and interest in research as a future.  As one put it, “If you don’t stop making science so much fun, I may decide I don’t want to go to medical school afterall!”

The greatest discovery of all this semester has been that our discovery-based approach in a research-rich and skills-laden environment works to engage students and deliver courses effectively to eager and willing and excited students.  We are encouraged about the future of the program and its impact on our students.

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Poky Little Puppies

by gwilson on Apr.10, 2009, under A Day in the Life...

poky-little-puppy-by-janette-sebring-lowreyOne of the most popular children’s books of all time is about a puppy with a mind of his own – The Poky Little Puppy.  No matter what he was supposed to do, the puppy did its own thing in its own time.  Students in Dr. Heidi DiFrancesca’s capstone research course have been experiencing a similar phenomenon with the cells used in their research.

Dr. D’s students decided to spend the semester testing chemicals reported to influence the growth of cancer cells.  However, the breast cancer cells purchased for use have made this difficult – they have been poky little puppies that have grown slowly and unpredictably, making experimentation impossible.  It is hard to plan out experiments when the cells to be used have “a mind of their own”. 

For several weeks, the faculty here in Abilene, suppliers of the cells, and experts elsewhere have puzzled over how this could be – the medium used, the atmosphere supplied, the conditions used have all been exactly as prescribed.  Recently, however, we replaced the CO2 incubator’s tank and found the problem in the regulator reading and the amount of CO2 provided in the initial tank purchased.  Now the cells are growing well and students are able to proceed in their work.

What have they learned this semester?  Don’t take anything for granted.  Research doesn’t always go smoothly.  What you read in a paper often only tells a fraction of the work and problem-solving that makes for good research.  Good thinking and persistence win out over tough problems.  These are often as important lessons as any learned in conducting research.  I can guarantee that their graduation into research labs or biotech/forensic labs  or health professions programs will be met with fewer frustrations and surprises than those students who have never been asked to do more than canned lab experiments.

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